R Session Info

# List of all used packages
library(tidyverse)
library(ggpubr)
library(ggtext)
library(scales)
library(lme4)
library(afex)
library(emmeans)
library(gridExtra)
library(readxl)
library(writexl)
library(ggnewscale)
library(plotly)
library(htmlwidgets)
library(magrittr)
library(DESeq2)

sessionInfo()

R version 4.4.0 (2024-04-24)
Platform: aarch64-apple-darwin20
Running under: macOS Sonoma 14.6.1

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRblas.0.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.12.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: America/New_York
tzcode source: internal

attached base packages:
[1] stats4    stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] DESeq2_1.44.0               SummarizedExperiment_1.34.0
 [3] Biobase_2.64.0              MatrixGenerics_1.16.0      
 [5] matrixStats_1.4.1           GenomicRanges_1.56.1       
 [7] GenomeInfoDb_1.40.1         IRanges_2.38.1             
 [9] S4Vectors_0.42.1            BiocGenerics_0.50.0        
[11] magrittr_2.0.3              htmlwidgets_1.6.4          
[13] plotly_4.10.4               ggnewscale_0.5.0           
[15] writexl_1.5.0               readxl_1.4.3               
[17] gridExtra_2.3               emmeans_1.10.4             
[19] afex_1.4-1                  lme4_1.1-35.5              
[21] Matrix_1.7-0                scales_1.3.0               
[23] ggtext_0.1.2                ggpubr_0.6.0               
[25] lubridate_1.9.3             forcats_1.0.0              
[27] stringr_1.5.1               dplyr_1.1.4                
[29] purrr_1.0.2                 readr_2.1.5                
[31] tidyr_1.3.1                 tibble_3.2.1               
[33] ggplot2_3.5.1               tidyverse_2.0.0            

loaded via a namespace (and not attached):
 [1] sandwich_3.1-1          rlang_1.1.4             multcomp_1.4-26        
 [4] compiler_4.4.0          vctrs_0.6.5             reshape2_1.4.4         
 [7] crayon_1.5.3            pkgconfig_2.0.3         fastmap_1.2.0          
[10] backports_1.5.0         XVector_0.44.0          utf8_1.2.4             
[13] rmarkdown_2.28          tzdb_0.4.0              UCSC.utils_1.0.0       
[16] nloptr_2.1.1            xfun_0.47               zlibbioc_1.50.0        
[19] jsonlite_1.8.8          DelayedArray_0.30.1     BiocParallel_1.38.0    
[22] broom_1.0.6             parallel_4.4.0          R6_2.5.1               
[25] stringi_1.8.4           car_3.1-2               boot_1.3-31            
[28] cellranger_1.1.0        numDeriv_2016.8-1.1     estimability_1.5.1     
[31] Rcpp_1.0.13             knitr_1.48              zoo_1.8-12             
[34] splines_4.4.0           timechange_0.3.0        tidyselect_1.2.1       
[37] rstudioapi_0.16.0       abind_1.4-5             yaml_2.3.10            
[40] codetools_0.2-20        lattice_0.22-6          lmerTest_3.1-3         
[43] plyr_1.8.9              withr_3.0.1             coda_0.19-4.1          
[46] evaluate_0.24.0         survival_3.7-0          xml2_1.3.6             
[49] pillar_1.9.0            carData_3.0-5           generics_0.1.3         
[52] hms_1.1.3               munsell_0.5.1           minqa_1.2.8            
[55] xtable_1.8-4            glue_1.7.0              lazyeval_0.2.2         
[58] tools_4.4.0             data.table_1.16.0       locfit_1.5-9.10        
[61] ggsignif_0.6.4          mvtnorm_1.3-1           grid_4.4.0             
[64] colorspace_2.1-1        nlme_3.1-166            GenomeInfoDbData_1.2.12
[67] cli_3.6.3               fansi_1.0.6             S4Arrays_1.4.1         
[70] viridisLite_0.4.2       gtable_0.3.5            rstatix_0.7.2          
[73] digest_0.6.37           SparseArray_1.4.8       TH.data_1.1-2          
[76] htmltools_0.5.8.1       lifecycle_1.0.4         httr_1.4.7             
[79] gridtext_0.1.5          MASS_7.3-61